Eugene Fitzalan

Tropical forests substantially influence the terrestrial carbon sink. Their contributions to the forest carbon sink may increase due to the stimulation of photosynthesis by rising atmospheric CO2 (Ca); however, the magnitude of this effect is poorly quantified for tropical canopy trees.We measured the ratio of two deuterium isotopomers of glucose derived from tree rings to estimate how photosynthetic efficiency (photorespiration‐to‐photosynthesis ratio) has responded to Ca rise at a centennial scale. Wood samples were obtained from Toona ciliata trees from three climatically distinct forests in Asia and Australia. We applied Bayesian mixed effect models to test how the isotopomer ratio changes with Ca, tree diameter (as a proxy for crown exposure), temperature, and precipitation.Across all sites, long‐term Ca rise increased photosynthetic efficiency, likely due to increased photosynthesis and the concurrent suppression of photorespiration. Increasing tree size reduced photosynthetic efficiency, likely due to reduced leaf internal CO2 at higher irradiance and stronger hydraulic limitation. Associations of photosynthetic efficiency with temperature and precipitation were inconclusive.Our study reveals a centennial‐scale association between photosynthetic efficiency and increasing Ca in canopy trees and provides a new and independent line of evidence for Ca‐induced stimulation of photosynthetic efficiency in tropical forests.

Biological invasions are increasing globally, with species demonstrating differing responses to climate change in their native and invaded ranges. Investigating how alien species respond to climate change is important for planning management interventions. This study considered how the distribution of Sphaeropteris cooperi (Hook. ex F.Muell.) R.M.Tryon, a widely cultivated invasive tree fern with a broad climatic tolerance, could alter under climate change in two invaded southern hemisphere biodiversity hotspots: South Africa's Garden Route and La Réunion Island, Mascarene Archipelago. To determine the distributional changes of S. cooperi under future climate change scenarios, its niche dynamics were assessed in its native range (Australia) and two invaded southern hemisphere ranges using Schoener's statistic for niche overlap and principal component analyses. An ensemble modelling approach was used to predict the potential distribution of S. cooperi under future (2041–2070 and 2071–2100) carbon emission scenarios (SSP1-2.6 and SSP 5–8.5) using five global climate models. The results suggest that S. cooperi demonstrates some climatic niche overlap (17.6 %) between the Garden Route and its native range (Australia), but less overlap (3.7 %) was found between La Réunion Island and Australia. On La Réunion Island, little niche overlap together with niche expansion suggests that S. cooperi occupies niches not occupied in its native range, and that niche conservatism does not hold true for this location. Thus, under current climatic conditions, future spread may be anticipated in both the Garden Route and La Réunion Island. However, climatic conditions are shifting making it important to consider climate change when predicting how the range of this invader may change in the future. Species distribution models revealed that for both biodiversity hotspots, regardless of climatic scenario or the time frame considered, the range of S. cooperi is predicted to shrink, although the degree of decline is expected to vary with time and climate scenario.

Colocasia esculenta (taro), native to tropical Southeast Asia, is an emergent aquatic plant with a wide global distribution. Valued for its agricultural, horticultural, medicinal, and cultural uses, it also has become invasive in some places, spreading unaided along slow-flowing water courses through corm division. Colocasia esculenta was introduced to South Africa at least a century ago (∼ 1918), but widespread invasions are recent, raising concerns that the species could become a harmful invader in the country. This study reviews the history of introduction, invasions, and impacts of C. esculenta around the world; maps its current and potential distribution in South Africa; and, based on a risk analysis, develops recommendations for its management and regulation. Colocasia esculenta has been introduced to at least 180 territories (countries or island states), with records of invasion from 21 of these (9 island and 12 mainland territories). The negative environmental impacts were scored as ‘Moderate’ with the formation of dense mats leading to declines in local native populations; and socioeconomic impacts scored as ‘Minor’ as it has irritant properties if not properly handled and prepared. In South Africa, C. esculenta is found in six provinces but most extensively in the Western Cape and KwaZulu-Natal. Based on a species distribution model, C. esculenta could substantially expand its range in areas where it is already established. Colocasia esculenta was classified as ‘high risk’ for South Africa, with high socio-economic benefits, and as such is identified as a potential conflict generating species. We recommend it is regulated as category 2 (permits are required to carry out any restricted activity) under the South African regulations and suggest exemptions on subsistence farming but prohibitions on all farming in riparian zones. Further investigation is needed for potential management options, including biological control. Recommendations should be reviewed after determining whether some of the subspecific entities present in the country pose a low risk, as then further exemptions or prohibitions might be appropriate.

Heat stress disturbs cellular homeostasis and alters the fitness of individual organisms. However, it is unclear whether thermal perturbations exacerbate the toxic effects of per- and polyfluorinated alkyl substances (PFASs) on trophic endpoints in freshwater ecosystems. We conducted a mesocosm experiment to investigate the impact of warming and PFASs on the widespread submerged macrophytes (Hydrilla verticillata) at a molecular level. Quantitative and air flow-assisted ionization mass spectrometry imaging results showed that warming significantly increased the accumulation of PFOS (3.53 L/kg) in the submerged leaf tissues. Accumulation of PFASs altered H. verticillata intracellular scavenging enzymes, an effect that may be exacerbated by 4 °C warming. Warming and PFASs influenced photosynthesis, biological rhythms, and ecological stoichiometry, causing a decrease in metabolites linked to the tricarboxylic acid cycle and amino acid metabolism, which compromised nitrogen use efficiency (9.9%–30.4% reduction in nitrogen content, 0.8%–22.8% increase in C:N ratios). Additionally, metabolites are linked to the antioxidant system or cell wall components, with linoleic acid decreasing by 17.1%–82.8% and carbohydrate-related compounds dropping by 52.2%–89.0%. Our modeling analyses revealed that H. verticillata enriched with PFASs could pose secondary risks when consumed by herbivorous fish (Ctenopharyngodon idellus) under warming, potentially affecting food chain dynamics.

Some plant lineages remain within the same biome over time (biome conservatism), whereas others seem to adapt more easily to new biomes. The c. 398 species (14 genera) of subfamily Cercidoideae (Leguminosae or Fabaceae) are found in many biomes around the world, particularly in the tropical regions of South America, Asia and Africa, and display a variety of growth forms (small trees, shrubs, lianas and herbaceous perennials). Species distribution maps derived from cleaned occurrence records were compiled and compared with existing biome maps and with the literature to assign species to biomes. Rainforest (144 species), succulent (44 species), savanna (36 species), and temperate (10 species) biomes were found to be important in describing the global distribution of Cercidoideae, with many species occurring in more than one biome. Two phylogenetically isolated species-poor temperate ( Cercis ) and succulent ( Adenolobus ) biome lineages are sister to two broadly distributed species-rich tropical clades. Ancestral state reconstructions on a time-calibrated phylogeny suggest biome shifts occurred throughout the evolutionary history of the subfamily, with shifts between the succulent and rainforest biomes, from the rainforest to savanna, from the succulent to savanna biome, and one early occurring shift into (or from) the temperate biome. Of the 26 inferred shifts in biome, three are closely associated with a shift from the ancestral tree/shrub growth form to a liana or herbaceous perennial habit. Only three of the 13 inferred transcontinental dispersal events are associated with biome shifts. Overall, we find that biome shifts tend to occur within the same continent and that dispersals to new continents tend to occur within the same biome, but that nonetheless the biome-conserved and biogeographically structured Cercidoideae have been able to adapt to different environments through time.

Herbarium specimens provide an important and central resource for biodiversity research. Making these records digitally available to end-users represents numerous challenges, in particular, transcribing metadata associated with specimen labels. In this study, we used the citizen science initiative ‘Les Herbonautes’ and the Récolnat network to transcribe specific data from all herbarium specimen labels stored at the Muséum national d’Histoire naturelle in Paris of the large tropical plant family Annonaceae. We compared this database with publicly available global biodiversity repository data and expert checklists. We investigated spatial and taxonomic advances in data availability at the global and country scales. A total of 20 738 specimens were transcribed over the course of more than two years contributing to and significantly extending the previously available specimen and species data for Annonaceae worldwide. We show that several regions, mainly in Africa and South East Asia not covered by online global datasets, are uniquely available in the P herbarium, probably linked to past history of the museum’s botanical exploration. While acknowledging the challenges faced during the transcription of historic specimens by citizen scientists, this study highlights the positive impact of adding records to global datasets both in space and time. This is illustrative for researchers, collection managers, policy makers as well as funders. These datasets will be valuable for numerous future studies in biodiversity research, including ecology, evolution, conservation and climate change science.

The use of non-pollen palynomorphs (NPP), particularly fossil fungi and algae, as palaeobiological proxies for Late Cretaceous palaeoenvironmental and palaeoclimatic reconstructions of warm-to-hot greenhouse conditions, can enhance our understanding of climate change impacts on modern Patagonian environments. This study aimed to reconstruct the Maastrichtian palaeoenvironment and palaeoclimate in the Cañadón Asfalto Basin (CAB, Chubut Province) by testing these NPPs as proxies using the Nearest Living Relative method (NLR). Moreover, using modern ecological requirements from open-source databases, such as GBIF and processing it with an open-source, cross-platform tool like QGIS, linked with Köppen-Geiger shapefiles, provided evidence of climate-driven palaeo-distribution patterns of fungal and algal diversity at CAB. Applying modern ecological requirements and biogeographic distribution data, we reconstructed the palaeoclimate as temperate with evenly distributed precipitation and warm summers, corresponding to the Cfb climate zone in Köppen-Geiger classifications. Additionally, our methodology produced reliable results regarding Cenozoic floras’ physiognomies based on fossil fungi, revealing a transition from sparsely wooded areas with palms and prairies to complex forest ecosystems with palms, deciduous trees, and shrubland. Furthermore, testing Cretaceous algae with the NLR method, for the first time, provided comprehensive insights into past water body characteristics, including trophic state and water quality.

ABSTRACTAimFerns are globally distributed, yet the number of studies examining the historical evolution of African taxa is relatively low. Investigation of the evolution of African fern diversity is critical in order to understand patterns and processes that have global relevance (e.g., the pantropical diversity disparity [PDD] pattern). This study aims to examine when and from where a globally distributed fern lineage arrived in sub‐Saharan Africa, to obtain a better understanding of potential processes contributing to patterns of diversity across the region.LocationGlobal, sub‐Saharan Africa.TaxonAsplenium (Aspleniaceae).MethodsWe analysed five loci from 537 Asplenium taxa using a maximum likelihood (IQ‐Tree) phylogenetic framework. For age estimation, we performed penalised likelihood as implemented in treePL, and executed a Bayesian analysis using BEAST. Biogeographical analyses were carried out using BioGeoBEARS.ResultsMost dispersals into Africa occurred within the last ~55 myr, with the highest diversity of sub‐Saharan African taxa concentrated in two clades, each of which descended from an Asian ancestor. Additional dispersals to sub‐Saharan Africa can be found throughout the phylogeny. Lastly, potential cryptic species diversity exists within Asplenium as evidenced by several polyphyletic taxa.Main ConclusionsWe recover multiple dispersals of Asplenium to sub‐Saharan Africa, with two major lineages likely diversifying after arrival.

Aim Species occurrence data are valuable information that enables one to estimate geographical distributions, characterize niches and their evolution, and guide spatial conservation planning. Rapid increases in species occurrence data stem from increasing digitization and aggregation efforts, and citizen science initiatives. However, persistent quality issues in occurrence data can impact the accuracy of scientific findings, underscoring the importance of filtering erroneous occurrence records in biodiversity analyses.InnovationWe introduce an R package, occTest, that synthesizes a growing open‐source ecosystem of biodiversity cleaning workflows to prepare occurrence data for different modelling applications. It offers a structured set of algorithms to identify potential problems with species occurrence records by employing a hierarchical organization of multiple tests. The workflow has a hierarchical structure organized in testPhases (i.e. cleaning vs. testing) that encompass different testBlocks grouping different testTypes (e.g. environmental outlier detection), which may use different testMethods (e.g. Rosner test, jacknife,etc.). Four different testBlocks characterize potential problems in geographic, environmental, human influence and temporal dimensions. Filtering and plotting functions are incorporated to facilitate the interpretation of tests. We provide examples with different data sources, with default and user‐defined parameters. Compared to other available tools and workflows, occTest offers a comprehensive suite of integrated tests, and allows multiple methods associated with each test to explore consensus among data cleaning methods. It uniquely incorporates both coordinate accuracy analysis and environmental analysis of occurrence records. Furthermore, it provides a hierarchical structure to incorporate future tests yet to be developed.Main conclusionsoccTest will help users understand the quality and quantity of data available before the start of data analysis, while also enabling users to filter data using either predefined rules or custom‐built rules. As a result, occTest can better assess each record's appropriateness for its intended application.

Myoporum is a genus of trees and shrubs native to the Northern Hemisphere that has been introduced to many parts of the world, mainly for ornamental purposes. We assessed the introduction history, distribution, and extent of naturalization/invasion for Myoporum species in South Africa.Information was collated to determine key events associated with the introduction, establishment, and naturalization of Myoporum in South Africa. Data were collated to determine the current distribution of the genus in South Africa. Twenty sites in the Western Cape were sampled to determine correlates of naturalization. Myoporum was first recorded in South Africa in 1934. Three species were confirmed to be present in South Africa: M. insulare, M. laetum and M. montanum (37 %, 25 % and 24 % of all iNaturalist records respectively). Most records are from the Western Cape (91 %) and small parts of the Eastern Cape; isolated populations occur in Gauteng and the Northern Cape. We could not confirm the presence M. petiolatum, M. tenuifolium or M. tetrandrum. Field surveys revealed widespread naturalization of M. insulare (46 % of all Research Grade observations in iNaturalist); this species was categorized code D1 in the introduction-naturalization-invasion continuum. Myoporum laetum (C3) and M. montanum (C2) are also widely naturalized but over smaller areas. Naturalized populations comprised predominantly juvenile M. insulare plants occurring in highly disturbed (transformed) habitats. Formal risk analyses for all Myoporum species in South Africa are needed as the basis for re-evaluation of their status in national legislation.