Ciencia habilitada por datos de especímenes

Hämälä, T., C. Moore, L. Cowan, M. Carlile, D. Gopaulchan, M. K. Brandrud, S. Birkeland, et al. 2024. Impact of whole-genome duplications on structural variant evolution in Cochlearia. Nature Communications 15. https://doi.org/10.1038/s41467-024-49679-y

Polyploidy, the result of whole-genome duplication (WGD), is a major driver of eukaryote evolution. Yet WGDs are hugely disruptive mutations, and we still lack a clear understanding of their fitness consequences. Here, we study whether WGDs result in greater diversity of genomic structural variants (SVs) and how they influence evolutionary dynamics in a plant genus, Cochlearia (Brassicaceae). By using long-read sequencing and a graph-based pangenome, we find both negative and positive interactions between WGDs and SVs. Masking of recessive mutations due to WGDs leads to a progressive accumulation of deleterious SVs across four ploidal levels (from diploids to octoploids), likely reducing the adaptive potential of polyploid populations. However, we also discover putative benefits arising from SV accumulation, as more ploidy-specific SVs harbor signals of local adaptation in polyploids than in diploids. Together, our results suggest that SVs play diverse and contrasting roles in the evolutionary trajectories of young polyploids. Cochlearia is an evolutionarily dynamic genus with different base chromosome numbers and ploidal levels. Here, the authors construct a graph-based pangenome for Cochlearia and reveal that whole-genome duplication associated with greater diversity of genomic structural variation and their possible function in adaptation.

Christiansen, D. M., L. L. Iversen, J. Ehrlén, and K. Hylander. 2021. Changes in forest structure drive temperature preferences of boreal understorey plant communities. Journal of Ecology 110: 631–643. https://doi.org/10.1111/1365-2745.13825

The local climate in forest understories can deviate substantially from ambient conditions. Moreover, forest microclimates are often characterized by cyclic changes driven by management activities such as clear-cutting and subsequent planting. To understand how and why understorey plant communities …

Xue, T., S. R. Gadagkar, T. P. Albright, X. Yang, J. Li, C. Xia, J. Wu, and S. Yu. 2021. Prioritizing conservation of biodiversity in an alpine region: Distribution pattern and conservation status of seed plants in the Qinghai-Tibetan Plateau. Global Ecology and Conservation 32: e01885. https://doi.org/10.1016/j.gecco.2021.e01885

The Qinghai-Tibetan Plateau (QTP) harbors abundant and diverse plant life owing to its high habitat heterogeneity. However, the distribution pattern of biodiversity hotspots and their conservation status remain unclear. Based on 148,283 high-resolution occurrence coordinates of 13,450 seed plants, w…

Chardon, N. I., S. Pironon, M. L. Peterson, and D. F. Doak. 2019. Incorporating intraspecific variation into species distribution models improves distribution predictions, but cannot predict species traits for a wide‐spread plant species. Ecography 43: 60–74. https://doi.org/10.1111/ecog.04630

The most common approach to predicting how species ranges and ecological functions will shift with climate change is to construct correlative species distribution models (SDMs). These models use a species’ climatic distribution to determine currently suitable areas for the species and project its po…

Joffard, N., F. Massol, M. Grenié, C. Montgelard, and B. Schatz. 2018. Effect of pollination strategy, phylogeny and distribution on pollination niches of Euro‐Mediterranean orchids I. Bartomeus [ed.],. Journal of Ecology 107: 478–490. https://doi.org/10.1111/1365-2745.13013

1.Pollination niches are important components of ecological niches and have played a major role in the diversification of Angiosperms. In this study, we focused on Euro‐Mediterranean orchids, which use diverse pollination strategies and interact with various functional groups of insects. In these or…